Glyma11g36510 - SoyBase

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Report for Sequence Feature Glyma11g36510

Feature Type:	gene_model
Chromosome:	Gm11
Start:	37952626
stop:	37956211
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g36510

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G07130	AT	Annotation by Michelle Graham. TAIR10: purple acid phosphatase 15 \| chr3:2255763-2257981 REVERSE LENGTH=532	SoyBase	E_val: 0	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0009846	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen germination	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003993	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid phosphatase activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG1378	KOG	Purple acid phosphatase	JGI		ISS
PTHR22953	Panther	ACID PHOSPHATASE RELATED	JGI		ISS
PF00149	PFAM	Calcineurin-like phosphoesterase	JGI		ISS
UniRef100_G7JA60	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Purple acid phosphatase n=1 Tax=Medicago truncatula RepID=G7JA60_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LN19	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1LN19_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma11g36510

Locus	Gene Symbol	Protein Name
	PAP22	Purple acid phosphatase 22 gene
	PAP22	Purple acid phosphatase gene 22

Expression Patterns of Glyma11g36510

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g36510

Paralog	Evidence	Comments
Glyma18g00410	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g36510 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g255700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g36510

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g36510

Limit To All Plant Sequences

>Glyma11g36510.1   sequence type=CDS   gene model=Glyma11g36510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGTTGATGGCGGCGGAGTTCCAACAACTCTGGATGGACCCTTCAAGCCTGTGACCGTTCCTCTTGATCAGAGCTTCCGAGCGGTTGACCTGCCAGATACAGATCCTCTGGTTCAAAGAACCGTTCAAGGGTTCCAGCCAGAACAAATCTCTCTTTCACTCTCTGTTTCTCATGATTCTGTTTGGATTTCTTGGATTACAGGGGAATTCCAAATTGGGGACAATATAGAACCCTTAGATCCTGAAACTGTTGCTAGCATAGTTCAATATGGAAGGTTAGGAAGGTCCATGAGACACAATGCTACGGGCTATTCCATAGTTTACAGTCAACTTTATCCTTTTGAAGGCCTTCAGAACTACACCTCTGGAATTATACATCATGTTCGTCTTACAGGATTGAGACCCAACACACTATATCAATATCAATGTGGCGATCCTTCGTTGTCAGCAATGAGTGACGTTCATTATTTCCGGACTATGCCAGTTTCAGGCCCCAAGAGCTACCCTAGCAGAATAGCAGTGGTTGGAGACTTGGGTCTTACATACAATACCACATCCACAGTTGATCATATGACCAGTAACCATCCTGATCTTATTCTGTTGGTTGGAGATGTTAGTTATGCCAACCTCTATCTTACTAATGGCACTGGGGCAGACTGCTCCTCTTGCTCATTTTCTAACACTCCCATCCATGAAACCTATCAGCCTCGTTGGGATTATTGGGGAAGGTACATGCAGCCTCTGATTTCTAGTGTCCCGGTAATGGTAATAGAAGGGAATCATGAGATTGAAGAACAAGCTGAAAACCAGACATTTGTTGCTTATAGTTCTCAATTTGCATTCCCATCAGAAGAGAGTGGATCATCATCCACTTTCTATTATTCTTTCAATGCAGGAGGGATACATTTTATAATGCTCGGGGCCTACATATCCTATGACAAATCAGGGGACCAGTACAGGTGGTTGGAGAGAGACTTGGCTTCTGTTGACAGGGAAGTGACTCCGTGGTTGATAGCTACATGGCATGCACCTTGGTATAGCACCTACGGGGCTCATTATAGAGAAGCAGAGTGTATGAGGGTAGAGATGGAAGACTTACTATATAAATATGGCATTGACATTGTCTTCAATGGACATGTTCATGCATATGAGAGATCAAACAGGGTATACAACTACACATTGAATCCTTGTGGTCCTGTTTATATCACGGTTGGAGATGGTGGTAACAGGGAAAAGATGGCAATCACACATGCTGATGAACCTGGACAGTGTCCAGAACCATCAACTACACCAGATGACTATATGGGTGGATTGATACGCAATCCACCCATAAAACGTTAA

Predicted protein sequences of Glyma11g36510

Limit To All Plant Sequences

>Glyma11g36510.1   sequence type=predicted peptide   gene model=Glyma11g36510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
IVDGGGVPTTLDGPFKPVTVPLDQSFRAVDLPDTDPLVQRTVQGFQPEQISLSLSVSHDSVWISWITGEFQIGDNIEPLDPETVASIVQYGRLGRSMRHNATGYSIVYSQLYPFEGLQNYTSGIIHHVRLTGLRPNTLYQYQCGDPSLSAMSDVHYFRTMPVSGPKSYPSRIAVVGDLGLTYNTTSTVDHMTSNHPDLILLVGDVSYANLYLTNGTGADCSSCSFSNTPIHETYQPRWDYWGRYMQPLISSVPVMVIEGNHEIEEQAENQTFVAYSSQFAFPSEESGSSSTFYYSFNAGGIHFIMLGAYISYDKSGDQYRWLERDLASVDREVTPWLIATWHAPWYSTYGAHYREAECMRVEMEDLLYKYGIDIVFNGHVHAYERSNRVYNYTLNPCGPVYITVGDGGNREKMAITHADEPGQCPEPSTTPDDYMGGLIRNPPIKR*

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